The Highfin Goby's elongated lanceolate caudal fin can be used to distinguish it from the Freshwater Goby, Frillfin Goby, Green Goby, Naked Goby, and Seaboard Goby. The Emerald Goby and Violet Goby which share the lanceolate caudal shape of the Highfin Goby can be discerned by their lack of a distinct dark ocellated spot beneath the first dorsal and an additional dark spot at the base of the caudal fin.